# eScience Center Software Directory

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Here is a **comprehensive table** summarizing the first 25 software entries listed on the Netherlands eScience Center Software Directory. For each entry, I include the name, a brief description, keywords/tags, and the direct URL from the source.
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<table><thead><tr><th width="65">#</th><th>Name</th><th>Description</th><th>Keywords / Domains</th><th>URL</th></tr></thead><tbody><tr><td>1</td><td>JASP modules app</td><td>A web application that allows you to search/filter all the available JASP modules and install them.</td><td>statistical software · webapp · modules</td><td><a href="https://research-software-directory.org/software/jasp-modules-app">https://research-software-directory.org/software/jasp-modules-app</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>2</td><td>PlanEO Dashboard</td><td>Provides an interactive interface for visualizing geographical data relevant to the MINE‑DD project.</td><td>demography · gis · interactive dashboard · visualization</td><td><a href="https://research-software-directory.org/software/planeo-dashboard">https://research-software-directory.org/software/planeo-dashboard</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>3</td><td>TulipaClustering.jl</td><td>Cluster profiles into representative periods.</td><td>clustering · energy system analysis · Julia · open source tool</td><td><a href="https://research-software-directory.org/software/tulipaclustering-jl">https://research-software-directory.org/software/tulipaclustering-jl</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>4</td><td>TulipaIO.jl</td><td>A Julia package relying on DuckDB to tie a variety of data sources with Julia (part of the Tulipa energy modelling ecosystem).</td><td>Julia · data integration · DuckDB · energy modelling</td><td><a href="https://research-software-directory.org/software/tulipaio-jl">https://research-software-directory.org/software/tulipaio-jl</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>5</td><td>TulipaEnergyModel</td><td>Provides an optimisation model for the electricity market and its coupling with other systems.</td><td>energy system modelling · sector coupling · open source tool</td><td><a href="https://research-software-directory.org/software/tulipaenergymodel">https://research-software-directory.org/software/tulipaenergymodel</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>6</td><td>QANS</td><td>“Questionnaire And Nomination Software” — a collection of software components to enable peer nomination and survey workflows.</td><td>peer nomination · survey · sociology · open source</td><td><a href="https://research-software-directory.org/software/qans">https://research-software-directory.org/software/qans</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>7</td><td>RESTful APE</td><td>A Java REST API for the APE (Automated Pipeline Explorer) library; supports workflow technologies and REST services.</td><td>Java · REST API · workflow technologies</td><td><a href="https://research-software-directory.org/software/restful-ape">https://research-software-directory.org/software/restful-ape</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>8</td><td>mkdocs rich argparse</td><td>An mkdocs plugin to generate documentation for a “rich argparse” parser; renders commands, sub‑commands and arguments in MkDocs.</td><td>Python · documentation · CLI tooling</td><td><a href="https://research-software-directory.org/software/mkdocs-rich-argparse">https://research-software-directory.org/software/mkdocs-rich-argparse</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>9</td><td>Effort Sharing</td><td>Analysis and plotting scripts for effort sharing, associated with the Carbon Budget Explorer.</td><td>data analysis · Python · carbon budget · visualization</td><td><a href="https://research-software-directory.org/software/effort-sharing">https://research-software-directory.org/software/effort-sharing</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>10</td><td>Open Matrices Stimulus Set (omss)</td><td>A Python package for generating matrix‑reasoning puzzles, inspired by Raven’s Progressive Matrices.</td><td>intelligence · matrices · Python · stimuli generation</td><td><a href="https://research-software-directory.org/software/open-matrices-stimulus-set-omss">https://research-software-directory.org/software/open-matrices-stimulus-set-omss</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>11</td><td>Climate Rapid Evaluation Framework</td><td>Rapid evaluation framework for climate simulations.</td><td>big data · climate modelling · open source</td><td><a href="https://research-software-directory.org/software/climate-rapid-evaluation-framework">https://research-software-directory.org/software/climate-rapid-evaluation-framework</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>12</td><td>Cosimplat</td><td>A co‑simulation framework developed for the RESCUE project.</td><td>co‑simulation · energy systems · open source</td><td><a href="https://research-software-directory.org/software/cosimplat">https://research-software-directory.org/software/cosimplat</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>13</td><td>KMM</td><td>Lightweight C++ middleware for accelerated computing.</td><td>GPU · high performance computing</td><td><a href="https://research-software-directory.org/software/kmm">https://research-software-directory.org/software/kmm</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>14</td><td>Kernel Float</td><td>C++ header‑only library for CUDA that simplifies working with vector types and reduced precision.</td><td>AI · GPU · big data</td><td><a href="https://research-software-directory.org/software/kernel-float">https://research-software-directory.org/software/kernel-float</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>15</td><td>ccglib</td><td>The Complex Common GEMM Library (ccglib) provides mixed‑precision matrix‑matrix multiplication kernels.</td><td>CUDA · GPU · HPC</td><td><a href="https://research-software-directory.org/software/ccglib">https://research-software-directory.org/software/ccglib</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>16</td><td>protein‑quest</td><td>Python package to search/retrieve/filter proteins and protein structures.</td><td>bioinformatics · proteins · Python</td><td><a href="https://research-software-directory.org/software/protein-quest">https://research-software-directory.org/software/protein-quest</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>17</td><td>visor</td><td>A set of tools for visibility analysis.</td><td>geospatial · GIS · isovist · R</td><td><a href="https://research-software-directory.org/software/visor">https://research-software-directory.org/software/visor</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>18</td><td>rcoins</td><td>Identify continuous lines in a spatial network.</td><td>geospatial · networks · R</td><td><a href="https://research-software-directory.org/software/rcoins">https://research-software-directory.org/software/rcoins</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>19</td><td>rcrisp</td><td>Tools to automate the morphological delineation of riverside urban areas.</td><td>data analysis · geospatial · R · urban rivers</td><td><a href="https://research-software-directory.org/software/rcrisp">https://research-software-directory.org/software/rcrisp</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>20</td><td>seahtrue</td><td>Processes XF analyser data on oxygen consumption and acidification from Agilent Wave .xls files.</td><td>metabolism · bioconductor · R · seahorse</td><td><a href="https://research-software-directory.org/software/seahtrue">https://research-software-directory.org/software/seahtrue</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>21</td><td>CLASS‑web</td><td>Implementation of the CLASS (Chemistry Land‑surface Atmosphere Soil Slab) model that runs entirely as a web service.</td><td>web service · climate modelling</td><td><a href="https://research-software-directory.org/software/class-web">https://research-software-directory.org/software/class-web</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>22</td><td>Verticox+</td><td>A Cox proportional hazards algorithm for vertically distributed data.</td><td>federated learning · Java · privacy preserving analysis</td><td><a href="https://research-software-directory.org/software/verticox">https://research-software-directory.org/software/verticox</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>23</td><td>H2 scenario preprocessing</td><td>Preprocessing script to create a database for the H2 scenario explorer.</td><td>data processing · energy transition · renewable energy</td><td><a href="https://research-software-directory.org/software/h2-scenario-preprocessing">https://research-software-directory.org/software/h2-scenario-preprocessing</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>24</td><td>H2 scenario explorer</td><td>Web application to visualize hydrogen production scenarios (HyChain WP1).</td><td>energy transition · renewable energy · visualization</td><td><a href="https://research-software-directory.org/software/h2-scenario-explorer">https://research-software-directory.org/software/h2-scenario-explorer</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td>25</td><td>Cronian</td><td>Python package for building copper plate optimisation models in Pyomo.</td><td>optimisation · Python · energy</td><td><a href="https://research-software-directory.org/software/cronian">https://research-software-directory.org/software/cronian</a> (<a href="https://www.esciencecenter.nl/software/">eScience Center</a>)</td></tr><tr><td></td><td></td><td></td><td></td><td></td></tr></tbody></table>

<table><thead><tr><th width="57">#</th><th>Name</th><th>Description</th><th>Keywords / Domains</th><th>Link</th></tr></thead><tbody><tr><td>26</td><td>Tilburg University Coding Café</td><td>Materials for Tilburg University’s Coding Café: community learning materials and presentations in Python &#x26; R.</td><td>community · learning materials · Python · R</td><td><a href="https://research-software-directory.org/software/tilburg-university-coding-caf%C3%A9">https://research-software-directory.org/software/tilburg-university-coding-café</a> (<a href="https://www.esciencecenter.nl/software/?utm_source=chatgpt.com">eScience Center</a>)</td></tr><tr><td>27</td><td>rcrisp Shiny app</td><td>A Shiny web‑app for the “rcrisp” package which automates the morphological delineation of riverside urban areas.</td><td>geospatial · R · shiny · webapp</td><td><a href="https://research-software-directory.org/software/rcrisp-shiny-app">https://research-software-directory.org/software/rcrisp-shiny-app</a> (<a href="https://www.esciencecenter.nl/software/?utm_source=chatgpt.com">eScience Center</a>)</td></tr><tr><td>28</td><td>INA tool</td><td>A web tool for visualising and analysing Institutional Statements using multilayer network visualisation.</td><td>multilayer networks · visualization</td><td><a href="https://research-software-directory.org/software/ina-tool">https://research-software-directory.org/software/ina-tool</a> (<a href="https://www.esciencecenter.nl/software/?utm_source=chatgpt.com">eScience Center</a>)</td></tr><tr><td>29</td><td>snakemake‑storage‑plugin‑rucio</td><td>A Snakemake storage plugin to handle files via the Rucio (data management for large scale) system.</td><td>rucio · snakemake · data management</td><td><a href="https://research-software-directory.org/software/snakemake-storage-plugin-rucio">https://research-software-directory.org/software/snakemake-storage-plugin-rucio</a> (<a href="https://www.esciencecenter.nl/software/?utm_source=chatgpt.com">eScience Center</a>)</td></tr><tr><td>30</td><td>CoeusAI</td><td>A QGIS plugin designed for exploration of multiband geospatial datasets, combining deep learning and classical ML.</td><td>deep learning · gis · machine learning · Python</td><td><a href="https://research-software-directory.org/software/coeusai">https://research-software-directory.org/software/coeusai</a> (<a href="https://www.esciencecenter.nl/software/?utm_source=chatgpt.com">eScience Center</a>)</td></tr><tr><td>31</td><td>protein‑detective</td><td>A Python package to detect proteins within electron‑microscopy density maps.</td><td>Python · macromolecular structure · cryo‑EM</td><td><a href="https://research-software-directory.org/software/protein-detective">https://research-software-directory.org/software/protein-detective</a> (<a href="https://www.esciencecenter.nl/software/?utm_source=chatgpt.com">eScience Center</a>)</td></tr><tr><td>32</td><td>haddock3</td><td>HADDOCK3: Modular software for integrative modelling of biomolecular complexes and docking.</td><td>biomolecular complexes · docking · integrative modelling</td><td><a href="https://research-software-directory.org/software/haddock3">https://research-software-directory.org/software/haddock3</a> (<a href="https://www.esciencecenter.nl/software/?utm_source=chatgpt.com">eScience Center</a>)</td></tr><tr><td>33</td><td>classmodel/form</td><td>A JSON‑schema rendering “form” component using Solid UI components for web interfaces.</td><td>web component · JSON schema · UI development</td><td><a href="https://research-software-directory.org/software/classmodel-form">https://research-software-directory.org/software/classmodel-form</a> (<a href="https://www.esciencecenter.nl/software/?utm_source=chatgpt.com">eScience Center</a>)</td></tr><tr><td>34</td><td>ESMValCore</td><td>Core functionality for the ESMValTool: community diagnostics &#x26; performance metrics for earth‑system models.</td><td>big data · visualization · workflow technologies</td><td><a href="https://research-software-directory.org/software/esmvalcore">https://research-software-directory.org/software/esmvalcore</a> (<a href="https://www.esciencecenter.nl/software/?utm_source=chatgpt.com">eScience Center</a>)</td></tr><tr><td>35</td><td>ESMValTool</td><td>Comprehensive suite for evaluation of earth‑system models covering diagnostics and performance metrics.</td><td>big data · optimized data handling · visualization</td><td><a href="https://research-software-directory.org/software/esmvaltool">https://research-software-directory.org/software/esmvaltool</a> (<a href="https://www.esciencecenter.nl/software/?utm_source=chatgpt.com">eScience Center</a>)</td></tr></tbody></table>

<table><thead><tr><th width="55">#</th><th>Name</th><th>Description</th><th>Keywords / Domains</th><th>Link</th></tr></thead><tbody><tr><td>36</td><td>Springtime</td><td>Spatiotemporal phenology research with interpretable models.</td><td>geospatial · machine learning · phenology</td><td><a href="https://research-software-directory.org/software/springtime">https://research-software-directory.org/software/springtime</a></td></tr><tr><td>37</td><td>OpenDA</td><td>A software framework and toolkit for data assimilation and model execution in environmental sciences.</td><td>data assimilation · environmental modelling · open source</td><td><a href="https://research-software-directory.org/software/openda">https://research-software-directory.org/software/openda</a></td></tr><tr><td>38</td><td>Netherlands eScience Center Python Template</td><td>Generic template for Python packages so you can spend less time setting up and configuring new packages and comply with the centre’s Software Development Guide.</td><td>software template · Python · project setup</td><td><a href="https://research-software-directory.org/software/nlesc-python-template">https://research-software-directory.org/software/nlesc-python-template</a></td></tr><tr><td>39</td><td>Teachbook Recombiner</td><td>Web app to pick chapters from a predefined list of TeachBooks and combine them into a new book using an online UI.</td><td>web application · education · book generation</td><td><a href="https://research-software-directory.org/software/teachbook-recombiner">https://research-software-directory.org/software/teachbook-recombiner</a></td></tr><tr><td>40</td><td>Rucio Policy Package for KM3NeT</td><td>Package with custom policies for the KM3NeT Collaboration’s Rucio instance (data‑management).</td><td>big data · data management · high performance computing</td><td><a href="https://research-software-directory.org/software/rucio-policy-package-for-km3net">https://research-software-directory.org/software/rucio-policy-package-for-km3net</a></td></tr><tr><td>41</td><td>Mahiru</td><td>Platform to support machine‑learning experiments, tracking of datasets and workflows.</td><td>machine learning · workflow tracking · Python</td><td><a href="https://research-software-directory.org/software/mahiru">https://research-software-directory.org/software/mahiru</a></td></tr><tr><td>42</td><td>Haddock3 UI</td><td>Web interface for the HADDOCK3 integrative modelling platform for biomolecular complexes.</td><td>biomolecular modelling · docking · web interface</td><td><a href="https://research-software-directory.org/software/haddock3-ui">https://research-software-directory.org/software/haddock3-ui</a></td></tr><tr><td>43</td><td>Protein‑Quest</td><td>Python package to search/retrieve/filter proteins and protein structures.</td><td>bioinformatics · proteins · Python</td><td><a href="https://research-software-directory.org/software/protein-quest">https://research-software-directory.org/software/protein-quest</a></td></tr><tr><td>44</td><td>ClassModel/Form</td><td>A JSON‑schema rendering “form” component using Solid UI components for web interfaces.</td><td>web components · JSON schema · UI development</td><td><a href="https://research-software-directory.org/software/classmodel-form">https://research-software-directory.org/software/classmodel-form</a></td></tr><tr><td>45</td><td>CoeusAI</td><td>A QGIS plugin designed for exploration of multiband geospatial datasets, combining deep learning and classical ML.</td><td>deep learning · GIS · machine learning · Python</td><td><a href="https://research-software-directory.org/software/coeusai">https://research-software-directory.org/software/coeusai</a></td></tr></tbody></table>
