Bioimaging Resources

Bioimaging Resources

Below is a comprehensive table containing all verified direct external links for the teaching resources listed on the GerBI-GMB site, including general microscopy, image analysis, company webinars, and community-developed materials. Where a direct link could not be verified, the entry is marked accordingly.

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🔬 Microscopy & Image Analysis Teaching Resources (Direct Links)

Category	Resource / Topic	Description / Focus	Direct Link
Microscopy (General)	Microcourses (Harvard)	Short educational videos on microscopy fundamentals	https://www.youtube.com/c/Microcourses
Microscopy (General)	iBiology Microscopy Course	Full lecture series on microscopy techniques and concepts	https://www.ibiology.org/online-biology-courses/microscopy-series/
Microscopy (General)	iBiology Microscopy Short Course	Condensed version of the full microscopy course	https://www.ibiology.org/online-biology-courses/short-microscopy-series/
Microscopy (General)	MyScope (Microscopy Australia)	Interactive training modules on light microscopy & electron microscopy	https://www.ammrf.org.au/myscope
Microscopy (General)	Introduction to Confocal Microscopy	Technical primer on confocal systems (FSU/Molecular Expressions)	https://micro.magnet.fsu.edu/primer/techniques/confocal/confocalintroduction.html
Microscopy (General)	Optical Microscopy Primer (FSU)	Comprehensive digital textbook on microscopy principles	https://micro.magnet.fsu.edu/primer/
Image Analysis	NEUBIAS Training Resources	Open-access training materials on bioimage analysis (Fiji, Python, etc.)	https://neubias.github.io/training-resources/
Image Analysis	NEUBIAS – All Modules	List of available training modules on image processing topics	https://neubias.github.io/training-resources/all-modules/
Image Analysis	BioImageAnalysis Notebooks	Interactive Jupyter-based tutorials for image analysis	https://haesleinhuepf.github.io/BioImageAnalysisNotebooks/intro.html
Image Analysis	Introduction to Bioimage Analysis (Book)	Online book and exercises on image analysis principles	https://bioimagebook.github.io/index.html
Image Analysis	CellProfiler Tutorials	Collection of tutorials on CellProfiler workflows	https://github.com/CellProfiler/tutorials
Open Science & Reproducibility	The Turing Way	Comprehensive guide to reproducible research	https://the-turing-way.netlify.app/reproducible-research/reproducible-research
Microscopy Software	Imaris Viewer	Free 3D/4D image data viewer from Oxford Instruments	https://imaris.oxinst.com/imaris-viewer
Institutional Resource	BioDIP (Dresden Imaging Platform)	Resources and teaching materials on imaging & analysis	https://www.biodip.de/resources/
Community Teaching	GerBI Online Teaching Portal	Curated link list from the microscopy community	https://gerbi-gmb.de/faq-items/online-teaching-by-microscopy-community/
Company Webinars	Abberior – Webinars	Recordings of microscopy webinars (superresolution, sample prep)	https://abberior.rocks/expertise/webinar-recordings/
Company Webinars	Abberior – Tutorials	Educational tutorials on advanced imaging methods	https://abberior.rocks/expertise/microscopy-tutorials/
Company Webinars	ZEISS Online Campus	Interactive microscopy tutorials and animations	https://zeiss-campus.magnet.fsu.edu/tutorials/index.html
Company Webinars	ZEISS YouTube Channel	Webinars, application demos, and on-demand training	https://www.youtube.com/user/ZeissMicroscopy/videos
Company Webinars	ZEISS Academy Microscopy	Video tutorials and online learning portal (registration required)	https://www.zeiss.com/microscopy/us/service-support/training-education/academy-microscopy.html